I’m pleased to report that Paul’s paper on Hyde-CNN has been accepted for publication in Molecular Ecology Resources, and the dadi.CUDA paper is in press at Molecular Biology and Evolution.
We also just posted a major update of our joint DFE preprint. Postdoc Xin Huang did a great job leading this revision. The main content difference is that new large-scale simulations with background selection demonstrate that such linked selection does not bias our inference. Xin also carefully replicated the other results in the paper, consolidating work that had been done by multiple undergraduates over the years to ensure correctness and consistency.