We are excited to welcome Paul Blischak to the group as a postdoc. Paul is supported by a National Plant Genome Initiative (NPGI) Postdoctoral Research Fellowship from the NSF, and he is being co-mentored by Prof. Mike Barker. During his fellowship, Paul will be working with Ryan on adapting dadi and other population genetics inference tools to polyploid species and with Mike on applying them to various crop species.
Paper on follow-up research to GWAS published
Our paper showing that recent GWAS prompt substantially less follow-up research into associated genes than older GWAS has been published in Human Genomics. It has been a long road to final publication, but we hope our work motivates new efforts to encourage GWAS follow-up.
Congratulations Alyssa!
Alyssa Fortier has been awarded an NSF Graduate Research Fellowship. The prestigious award recognizes not only her academic accomplishments, but also her leadership as president of MathCats. There she set up a tutoring program that connects UA students with refugee children. She was also named Outstanding Senior for the department of Mathematics.
After graduation, Alyssa will pursue her Ph.D. in Biology at Stanford University. There she’ll be among one of the greatest groups of population genetics researchers in the world.
Also, see the nice writeup in the MCB newsletter.
GWAS publications preprint updated
We’ve posted an updated version of our bioRxiv preprint on the ability of genome-wide association studies to spur subsequent research into newly associated genes. Most importantly, we found that the effect of GWAS has declined dramatically, suggesting that researchers are following-up on GWAS much less than they used to. Although our work does not show why recent GWAS have much less impact than earlier GWAS, we hope it motivates efforts to encourage GWAS follow-up.
Cancer xenograft variant filtering paper published
Our paper with the Knudsen group on filtering mouse contamination from genome sequences of xenograft tumors is now in press at Bioinformatics. Congratulations to Brian!